A Scoring Method for the Clustering of Nucleic Acid Sequences
نویسندگان
چکیده
منابع مشابه
A Scoring Method for the Clustering of Nucleic Acid Sequences
The clustering of biological sequence data is a significant task for biologists. The reason is that sequence clustering assists molecular biologists to group sequences based on the ancestral traits or hereditary information that are hidden in sequences. To accomplish the similarity detection and clustering tasks, several clustering algorithms, similarity and distance measures have been proposed...
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Particle swarm optimization (PSO) has been employed on several optimization problems, including the clustering problem. PSO has also been employed in the clustering of data of different structure and dimensionality. In this paper it is employed in the clustering of nucleic acid sequences. The application of clustering, as a statistical tool, in the analysis of data of varied complexity has been...
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A method of computing the fraction of matches between two nucleic acid sequences at all possible alignments is described. It makes use of the Fast Fourier Transform. It should be particularly efficient for very long sequences, achieving its result in a number of operations proportional to n ln n, where n is the length of the longer of the two sequences. Though the objective achieved is of limit...
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Various types of sequences in the human genome are known to play important roles in different aspects of genomic functioning. Among these sequences, palindromic nucleic acid sequences are one such type that have been studied in detail and found to influence a wide variety of genomic characteristics. For a nucleotide sequence to be considered as a palindrome, its complementary strand must read t...
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ژورنال
عنوان ژورنال: International Journal of Computer Applications
سال: 2012
ISSN: 0975-8887
DOI: 10.5120/6235-8331